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1.
J Biomol Struct Dyn ; 34(5): 971-82, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-26079212

RESUMO

We explore with molecular modeling, dynamics simulations, and a statistical model the ability of chitosan nanoneedles (CNNs) to be internalized into a model lipid bilayer as a function of their length, keeping in view of their applications in the field of biomedicine for advanced targeted drug delivery. In this study, we have computationally modeled and studied the structural geometry and the stability of CNNs formed by 4, 6, and 8 subunits. We reported the molecular surface analysis of the modeled CNNs along with molecular dynamic (MD) simulations studies toward revealing the noninvasive cellular internalization potential of these CNNs and a case study has been carried to study the ability of CNNs to translocate silver nanoparticles across membrane. The present results are strongly in support of further exploration of 8 subunits based CNNs for their application as target drug delivery vehicles. The hydrophilicity of the CNNs has been attributed as one of the key factors responsible for the internalization process. Moreover, our MD simulation studies marched the ability of CNNs to translocate silver nanoparticles through biological membrane in a similar manner that resembles cell-penetrating peptides.


Assuntos
Quitosana , Nanopartículas Metálicas , Prata , Transporte Biológico , Membrana Celular/metabolismo , Quitosana/química , Quitosana/metabolismo , Ligação de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Espaço Intracelular , Conformação Molecular , Simulação de Dinâmica Molecular , Permeabilidade , Prata/química , Prata/metabolismo , Eletricidade Estática , Termodinâmica
2.
Daru ; 18(3): 230-6, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-22615621

RESUMO

BACKGROUND AND THE PURPOSE OF THE STUDY: Various compounds from natural and synthetic origins containing the 1,3-diarylpropenone structure have been reported to produce a variety of biological activities like anti-microbial, anti-inflammatory, vascular muscle relaxant, etc. A systematic analysis of the structural features responsible for anti-inflammatory activity and a possible mode of their actions were proposed to be evaluated by synthesizing a set of compounds, screening them for anti-inflammatory activity and developing a QSAR model. METHODS: Two types of 1,3-diarylpropenone derivatives were synthesized employing the Claisen-Schmidt condensation. These compounds were then screened for their in vivo anti- inflammatory activity by the carrageenin induced rat paw edema method and also for in vitro cyclooxygenase-2 (COX-2) inhibition activity using a colorimetric kit for COX (ovine) inhibitor screening assay. These derivatives and their anti-inflammatory activity data were employed for QSAR analysis on Vlife MDS 3.5 software. The molecules were divided into training and test sets based on observed activity and QSAR models were generated for the training set and validated. The activity of the molecules of the test set was predicted according to the QSAR equation fit. Possible correlation between observed anti-inflammatory activity and in vitro cyclooxygenase-2 inhibition was also studied. RESULTS AND CONCLUSION: Insignificant difference between the observed and predicted biological activity revealed that the selected electronic, steric and lipophilic parameters have a significant correlation (r(2)=0.85) with anti-inflammatory activity of the selected class of compounds. On the basis of results it may be suggested that the 1,3-diaryl-2-propen-1-ones framework is an attractive template for structural optimization to achieve better potency of anti-inflammatory activity. Similarly, the relatively low correlation between anti-inflammatory activity and cyclooxygenase-2 inhibition indicates that other modes of actions may also be responsible for the anti-inflammatory activity of the tested compounds.

3.
Bioorg Med Chem ; 17(4): 1654-62, 2009 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-19157882

RESUMO

Factors II, V, VII and Xa have materialized as a key enzymes for the intervention of blood coagulation cascade and for the development of new anti thrombotic agents. The combined density functional quantum mechanical/molecular mechanical (QM/MM) approach has been used to access inhibition of prothrombin and thrombin production. The biological activities of coumarin derivatives as clotting factor inhibitors was quantitatively analyzed in terms of physicochemical parameters utilizing the principal component analysis. Structural requirements for maximal potency were derived from the results of a quantitative structure activity relationship analysis.


Assuntos
Anticoagulantes/química , Anticoagulantes/farmacologia , Cumarínicos/química , Cumarínicos/farmacologia , Modelos Químicos , Fenômenos Químicos , Análise Discriminante , Análise de Componente Principal , Protrombina/antagonistas & inibidores , Protrombina/biossíntese , Protrombina/metabolismo , Tempo de Protrombina , Relação Quantitativa Estrutura-Atividade , Teoria Quântica , Trombina/antagonistas & inibidores , Trombina/biossíntese , Trombina/química
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